Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013434.1_2028_2381_F

Intron Information:

Intron Rank:

140795

Intron Class:

major

Intron Phase:

Intron Coordinates:

2028 - 2381

Intron Length:

354

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAATGCTT

5'SS Class:

major

3'SS Sequence:

TATCTGGATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTATCTGGATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.5

1.1

66.2

44.9

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

65.5

0.35

62.8

43.1

Minor 5ss

36.3

-1.6

3.5

48.3

47.3

Minor BPS

61.2

0.43

1.5

80.06

35.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025791

Chromosome:

PEDO01013434.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040477

984 - 3054

2071