Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013437.1_4167_4793_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4167 - 4793

Intron Length:

627

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGCGGC

5'SS Class:

major

3'SS Sequence:

TGCCCTGCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCAAGAT

U12 Branch Point Sequence:

TAGGTCCCACCC

Flanking Amino Acid:

VLMVHKRSHTAKTSTEGFCL

Intron Amino Acid Position:

124

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

57.9

41.8

Major BPS

54.8

0.12

1.2

51.3

42.7

Major PPT

66.5

0.37

0.9

57.2

38.6

Minor 5ss

31.7

-2.1

3.3

41.6

45.3

Minor BPS

39.6

-0.8

47.76

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022403

Chromosome:

PEDO01013437.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043616

4114 - 7657

3544