Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013453.1_1195_1570_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1195 - 1570

Intron Length:

376

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGGGTAGG

5'SS Class:

major

3'SS Sequence:

CTCTCTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACCGAA

U12 Branch Point Sequence:

CTGCACCCAACC

Flanking Amino Acid:

TSLGPGVTPPGLPPPGSFPP

Intron Amino Acid Position:

236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.5

1.1

59.7

46.7

Major BPS

47.2

-0.1

1.1

42.1

30.6

Major PPT

86.3

0.82

0.7

84.1

23.9

Minor 5ss

27.9

-2.5

2.8

24.1

37.2

Minor BPS

43.6

-0.5

54.17

43.1

Associated Gene:

Gene:

SF3B4

Ensembl Gene ID:

ENSAPLG00000022064

Chromosome:

PEDO01013453.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038157

21 - 3142

3122