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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013461.1_2046_2128_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2046 - 2128
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGCTG
5'SS Class:
major
3'SS Sequence:
TCTGCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TGCCCCCAACTC
Flanking Amino Acid:
TRKGSITSVQAIYVPADDLT
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
57.1
47.2
Major BPS
50
0
1.2
61.8
35.9
Major PPT
71.7
0.49
0.8
62.2
34.7
Minor 5ss
33
-1.9
3.6
46.8
48.6
Minor BPS
40.4
-0.7
2
48.86
41.4

Associated Gene:

Gene:
ATP5F1B
Ensembl Gene ID:
ENSAPLG00000009343
Chromosome:
PEDO01013461.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009724
59 - 2996
2938