Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013463.1_3607_4824_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3607 - 4824

Intron Length:

1218

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGAGGAGG

5'SS Class:

major

3'SS Sequence:

CCTAACCCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAC

U12 Branch Point Sequence:

CCCTCCTAACCC

Flanking Amino Acid:

SPAAFITNFTMEQETQRFRV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.1

62.4

43.5

Major BPS

0.55

71.8

31.4

Major PPT

69.6

0.44

0.9

58.5

Minor 5ss

28.6

-2.4

3.1

35.2

41.4

Minor BPS

48.6

-0.1

57.24

47.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027136

Chromosome:

PEDO01013463.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039192

3431 - 6777

3347