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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013463.1_5734_5822_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5734 - 5822
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CCAAACCCCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCAAAA
U12 Branch Point Sequence:
TGTCCCCAAACC
Flanking Amino Acid:
RYIESLEAEGWTDLDCALLA
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.2
36.6
Major BPS
55.5
0.14
1
61.5
32.5
Major PPT
59
0.2
0.9
49.9
33.5
Minor 5ss
34.5
-1.8
2.8
48.2
40.4
Minor BPS
52.4
0.06
2
69.97
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027136
Chromosome:
PEDO01013463.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039192
3431 - 6777
3347