Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013469.1_1142_1270_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1142 - 1270

Intron Length:

129

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAAATG

5'SS Class:

major

3'SS Sequence:

TGCCTTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATAAA

U12 Branch Point Sequence:

GGCATATAAACT

Flanking Amino Acid:

QERESSLHISAPFFHNAQPW

Intron Amino Acid Position:

244

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.1

41.8

Major BPS

69.8

0.49

70.3

31.8

Major PPT

85.7

0.8

83.8

31.2

Minor 5ss

35.4

-1.7

3.3

48.6

47.1

Minor BPS

45.1

-0.2

1.9

59.01

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024530

Chromosome:

PEDO01013469.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043937

21 - 4023

4003