Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013469.1_2529_2963_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2529 - 2963

Intron Length:

435

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGATCC

5'SS Class:

strong_major

3'SS Sequence:

CTCCATTGCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

ATCTCACTACCT

Flanking Amino Acid:

VTLHLLFLGSAQLRVEGPGQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

69.5

36.3

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

68.1

0.41

60.3

Minor 5ss

37.8

-1.4

3.3

51.1

45.6

Minor BPS

47.9

-0

2.2

72.35

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024530

Chromosome:

PEDO01013469.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043937

21 - 4023

4003