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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013473.1_1729_2094_R

Intron Information:

Intron Rank:
144530
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1729 - 2094
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGTTTTG
5'SS Class:
major
3'SS Sequence:
AGAAGAGTTGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGGCAC
U12 Branch Point Sequence:
CGACCATCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
67.7
40.1
Major BPS
50
0
1.5
63.1
44.5
Major PPT
43
-0.4
1.7
36.1
44.3
Minor 5ss
37
-1.5
3.2
48.8
47.4
Minor BPS
42.6
-0.5
2
57.18
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025086
Chromosome:
PEDO01013473.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040079
21 - 2336
2316