About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013475.1_150_187_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
150 - 187
Intron Length:
38

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCG|GCACGGGGG
5'SS Class:
major
3'SS Sequence:
CGGACACCCCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GACACAC
U12 Branch Point Sequence:
TGCGCCCCGACA
Flanking Amino Acid:
SVPQLGGARPAPPMLQFPSG
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.3
58.3
43.7
Major BPS
46.9
-0.1
1.1
52.6
34.2
Major PPT
55.5
0.12
1
43.7
37.7
Minor 5ss
17.7
-3.7
4.1
28.3
43.9
Minor BPS
45.2
-0.3
2
56.34
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006399
Chromosome:
PEDO01013475.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006623
92 - 2589
2498