About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013475.1_422_1287_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
422 - 1287
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GCGCTGCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCCCAC
U12 Branch Point Sequence:
CCGGCCCCACGG
Flanking Amino Acid:
QGLDTKQWREFGRTEVIDNS
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
42.9
-0.4
1.3
46
38.7
Major PPT
60.8
0.24
1
50.1
39.3
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
31.5
-1.5
2
27.05
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006399
Chromosome:
PEDO01013475.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006623
92 - 2589
2498