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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013516.1_377_1242_F

Intron Information:

Intron Rank:
144677
Intron Class:
major
Intron Phase:
Intron Coordinates:
377 - 1242
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATAGC
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATCATTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.5
41.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
35
-1.7
2.8
37
40.5
Minor BPS
60.8
0.42
1.6
77.42
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027961
Chromosome:
PEDO01013516.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029700
21 - 2382
2362