About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013519.1_403_1611_R

Intron Information:

Intron Rank:
137075
Intron Class:
major
Intron Phase:
Intron Coordinates:
403 - 1611
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
CATTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TACTCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.1
31.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.9
0.9
0.7
88.2
28.6
Minor 5ss
48.3
-0.2
2.3
59
39.8
Minor BPS
61.6
0.45
1.7
76.34
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021243
Chromosome:
PEDO01013519.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030764
21 - 2429
2409