Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013538.1_242_3836_R

Intron Information:

Intron Rank:

151431

Intron Class:

major

Intron Phase:

Intron Coordinates:

242 - 3836

Intron Length:

3595

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGATGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TATGTCCTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

72.5

39.9

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

1.01

0.6

88.4

28.7

Minor 5ss

38.3

-1.3

3.4

56.2

Minor BPS

47.5

-0.1

68.95

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029028

Chromosome:

PEDO01013538.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046135

21 - 5044

5024