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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013544.1_979_1266_R

Intron Information:

Intron Rank:
144921
Intron Class:
major
Intron Phase:
Intron Coordinates:
979 - 1266
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAACGGTC
5'SS Class:
major
3'SS Sequence:
TTTGTCCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGATCAA
U12 Branch Point Sequence:
GCTGGATCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
63.7
42.8
Major BPS
48.4
-0.1
1.3
51.7
43.9
Major PPT
82.5
0.73
0.8
77.3
31.4
Minor 5ss
39.8
-1.1
3.7
59
45.9
Minor BPS
42.4
-0.6
2.2
52.34
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025365
Chromosome:
PEDO01013544.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033598
387 - 1396
1010