Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013565.1_2752_2877_R

Intron Information:

Intron Rank:

141544

Intron Class:

major

Intron Phase:

Intron Coordinates:

2752 - 2877

Intron Length:

126

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGAGG

5'SS Class:

major

3'SS Sequence:

CTCCTTTGTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

ATGTTTATATTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.4

0.46

1.1

57.8

46.6

Major BPS

79.2

0.73

75.3

39.4

Major PPT

80.5

0.69

0.9

79.5

32.5

Minor 5ss

29.9

-2.3

3.3

39.8

45.8

Minor BPS

46.4

-0.2

1.7

56.54

36.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023472

Chromosome:

PEDO01013565.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046737

21 - 2916

2896