Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013591.1_18970_19023_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18970 - 19023

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGA|GCAACACCC

5'SS Class:

weak_major

3'SS Sequence:

CCCGTGCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAT

U12 Branch Point Sequence:

CTGTCCCCAGCT

Flanking Amino Acid:

SPSAPIHTPWTAPYTPGCAH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.5

0.01

1.4

54.4

Major BPS

67.4

0.43

1.1

57.1

41.8

Major PPT

63.5

0.31

0.9

53.2

36.7

Minor 5ss

29.7

-2.3

40.3

39.4

Minor BPS

47.2

-0.1

2.1

69.05

47.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006653

Chromosome:

PEDO01013591.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019076

18720 - 23851

5132