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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013591.1_22974_23109_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22974 - 23109
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAT
U12 Branch Point Sequence:
CTGCCCGCAGCC
Flanking Amino Acid:
LVAATIIYFKPQCKIADPIS
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.4
39.2
Major BPS
64.6
0.36
1.3
67.6
40.6
Major PPT
81.9
0.72
0.8
76.4
32.2
Minor 5ss
27.9
-2.5
3.3
40.6
45.6
Minor BPS
41
-0.7
2.3
51.89
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006653
Chromosome:
PEDO01013591.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006892
19339 - 23851
4513
ENSAPLT00000035856
22566 - 24415
1850
ENSAPLT00000021938
17916 - 23851
5936
ENSAPLT00000019076
18720 - 23851
5132