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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013591.1_4142_4422_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4142 - 4422

Intron Length:

281

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGACAGCA

5'SS Class:

major

3'SS Sequence:

CCCTGCCCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAG

U12 Branch Point Sequence:

CCTGCCCCACAG

Flanking Amino Acid:

EMLRTIEFQTEPLGEEEGDG

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.7

0.54

1.1

64.8

35.2

Major BPS

43.9

-0.3

1.6

36.8

44.4

Major PPT

0.41

0.8

60.3

29.7

Minor 5ss

30.8

-2.2

3.3

39.5

45.9

Minor BPS

35.9

-1.2

2.1

44.9

Associated Gene:

Gene:

TRIM54

Ensembl Gene ID:

ENSAPLG00000030363

Chromosome:

PEDO01013591.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018907

2585 - 5582

2998