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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013591.1_5188_5522_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5188 - 5522

Intron Length:

335

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGGCCG

5'SS Class:

major

3'SS Sequence:

GGCAGTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAG

U12 Branch Point Sequence:

GCCCCCTGAGCC

Flanking Amino Acid:

MEEICRTIEENGRRQKQHL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

44.7

Major BPS

-0.1

1.5

42.6

40.4

Major PPT

63.4

0.3

54.3

41.3

Minor 5ss

24.2

-3

3.2

29.7

43.3

Minor BPS

47.7

-0.1

1.7

53.68

43.6

Associated Gene:

Gene:

TRIM54

Ensembl Gene ID:

ENSAPLG00000030363

Chromosome:

PEDO01013591.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018907

2585 - 5582

2998