Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013591.1_8633_8705_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8633 - 8705

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGGGGC

5'SS Class:

major

3'SS Sequence:

CTCTGTGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

TGGGCTCTCACG

Flanking Amino Acid:

AAMMAVRVLLDHDVQEDRIF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

60.2

38.7

Major BPS

72.7

0.56

30.1

Major PPT

70.6

0.46

0.9

64.5

36.5

Minor 5ss

24.3

-3

3.3

28.8

38.7

Minor BPS

42.8

-0.7

2.1

48.1

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022538

Chromosome:

PEDO01013591.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048207

158 - 8972

8815