Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013622.1_414_651_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

414 - 651

Intron Length:

238

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGGCGG

5'SS Class:

major

3'SS Sequence:

CCCCCCCGGGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGCCGAC

U12 Branch Point Sequence:

CGGGGCCGACCC

Flanking Amino Acid:

SRRFVKDRFTAAAALTPFTV

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

55.2

Major BPS

40.5

-0.6

1.3

29.5

35.8

Major PPT

57.3

0.16

52.8

31.1

Minor 5ss

29.7

-2.3

3.2

30.3

42.8

Minor BPS

32.9

-1.3

35.98

40.8

Associated Gene:

Gene:

TLX3

Ensembl Gene ID:

ENSAPLG00000004931

Chromosome:

PEDO01013622.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043384

31 - 1063

1033

ENSAPLT00000005079

92 - 1063

972