About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013631.1_1016_1096_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1016 - 1096
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACCGGGG
5'SS Class:
weak_major
3'SS Sequence:
CTGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
ATTGTGGTGACG
Flanking Amino Acid:
TIDQQALETLGVVTALTERV
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.1
0.1
1.3
40.7
45.9
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
32.7
-2
3.7
37.8
47
Minor BPS
40
-0.9
2.6
51.43
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019041
Chromosome:
PEDO01013631.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032942
321 - 1667
1347