Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013663.1_4369_4720_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4369 - 4720

Intron Length:

352

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGCGCG

5'SS Class:

major

3'SS Sequence:

TTTTTCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTCAA

U12 Branch Point Sequence:

GCCCACTCAAAC

Flanking Amino Acid:

RQIQNQLEEMLKSFHNELLT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

58.5

40.7

Major BPS

65.6

0.39

0.9

67.3

29.6

Major PPT

93.2

0.97

0.6

89.1

19.8

Minor 5ss

31.4

-2.1

3.2

35.7

42.1

Minor BPS

-0.4

1.8

47.5

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028409

Chromosome:

PEDO01013663.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020543

4165 - 5214

1050