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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013664.1_1231_1338_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1231 - 1338
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
CCCCACTTAACC
Flanking Amino Acid:
RYGKEGLMGAAGPGGSRADA
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
82.8
0.74
0.7
77.1
24.9
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
57.3
0.21
1.6
60.61
44.6

Associated Gene:

Gene:
DNAJB2
Ensembl Gene ID:
ENSAPLG00000026741
Chromosome:
PEDO01013664.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045337
21 - 2292
2272