Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013696.1_1544_1647_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1544 - 1647

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGATGG

5'SS Class:

major

3'SS Sequence:

CCCGTGTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTCAG

U12 Branch Point Sequence:

CCCCGCTCAGCG

Flanking Amino Acid:

DPSADPELALALRVSMEEQR

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

61.2

40.1

Major BPS

47.4

-0.1

1.6

54.7

43.1

Major PPT

0.38

0.9

60.2

35.4

Minor 5ss

-2.1

35.2

43.3

Minor BPS

38.5

-1

2.1

36.41

45.4

Associated Gene:

Gene:

PSMD4

Ensembl Gene ID:

ENSAPLG00000002002

Chromosome:

PEDO01013696.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023454

463 - 3463

3001

ENSAPLT00000002003

529 - 3464

2936