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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013696.1_900_1054_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
900 - 1054
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCAGCGGGG
5'SS Class:
weak_major
3'SS Sequence:
CTGCATGGCGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
CCTGCAGCGACA
Flanking Amino Acid:
RPARTLRDEGAICSSSVMLL
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.3
51.5
42.6
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
55
0.11
1
49.6
38.9
Minor 5ss
22
-3.2
4.3
28.2
44
Minor BPS
37.7
-0.9
2.3
47.15
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018358
Chromosome:
PEDO01013696.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017430
447 - 1751
1305