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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013703.1_1326_1429_R

Intron Information:

Intron Rank:
148740
Intron Class:
major
Intron Phase:
Intron Coordinates:
1326 - 1429
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
CTTCCCTTACGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
83.3
0.75
0.7
77.4
24.5
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
50.5
-0.1
2
60.35
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027494
Chromosome:
PEDO01013703.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044839
1213 - 3179
1967