Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013703.1_2300_2581_R

Intron Information:

Intron Rank:

148743

Intron Class:

major

Intron Phase:

Intron Coordinates:

2300 - 2581

Intron Length:

282

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGCACC

5'SS Class:

major

3'SS Sequence:

CCACTTTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTTAA

U12 Branch Point Sequence:

CCATGGTTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.3

69.7

41.3

Major BPS

0.17

1.3

49.4

Major PPT

72.8

0.51

0.8

64.7

36.2

Minor 5ss

36.1

-1.6

2.7

44.7

42.9

Minor BPS

48.3

-0

2.4

68.01

48.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027494

Chromosome:

PEDO01013703.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044839

1213 - 3179

1967