Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013729.1_1080_1194_F

Intron Information:

Intron Rank:

144591

Intron Class:

major

Intron Phase:

Intron Coordinates:

1080 - 1194

Intron Length:

115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

CCCCCCCTCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGTTAAC

U12 Branch Point Sequence:

CCCCCGTTAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

0.9

71.1

34.7

Major BPS

62.1

0.3

1.2

38.7

Major PPT

70.6

0.46

0.8

63.4

24.7

Minor 5ss

27.1

-2.6

2.9

24.2

36.8

Minor BPS

-0

2.1

59.26

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027898

Chromosome:

PEDO01013729.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046925

21 - 1528

1508