Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013751.1_1080_1475_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1080 - 1475

Intron Length:

396

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGCACG

5'SS Class:

major

3'SS Sequence:

TCTTTCTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

CCATCCCCATCC

Flanking Amino Acid:

SWEYLVHHAMAISAFVSLII

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

64.1

41.7

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

84.1

0.77

0.7

31.7

Minor 5ss

34.4

-1.8

2.8

40.8

Minor BPS

43.5

-0.5

2.1

52.13

44.8

Associated Gene:

Gene:

TLCD1

Ensembl Gene ID:

ENSAPLG00000023285

Chromosome:

PEDO01013751.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026289

208 - 1862

1655