Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013775.1_6229_6409_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6229 - 6409

Intron Length:

181

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGCGCTTT

5'SS Class:

major

3'SS Sequence:

TCCCGTCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAC

U12 Branch Point Sequence:

GTGCCCCCACCC

Flanking Amino Acid:

DGKISHQFPLNNNEDNPSCN

Intron Amino Acid Position:

334

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

67.7

39.9

Major BPS

-0.3

1.2

49.7

35.3

Major PPT

70.2

0.46

0.8

61.1

35.1

Minor 5ss

43.4

-0.7

3.3

60.9

Minor BPS

42.9

-0.5

53.98

43.2

Associated Gene:

Gene:

CPNE9

Ensembl Gene ID:

ENSAPLG00000022546

Chromosome:

PEDO01013775.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044647

5022 - 9286

4265