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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013775.1_7361_7740_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7361 - 7740
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TCTTTGCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
TCCCCCTGAGCC
Flanking Amino Acid:
VRALCNGDYDRTVKIDVYDW
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
58.8
40.6
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
80.9
0.69
0.8
72.8
37.5
Minor 5ss
24.6
-2.9
3.4
32.5
42.6
Minor BPS
50.4
-0
1.8
60.78
44.2

Associated Gene:

Gene:
CPNE9
Ensembl Gene ID:
ENSAPLG00000022546
Chromosome:
PEDO01013775.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044647
5022 - 9286
4265