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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013820.1_5513_5741_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5513 - 5741
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CTTTCCAAAACC
Flanking Amino Acid:
SSFLPFTIPHSTTKDTVLNG
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
78
0.63
0.7
69.7
31.1
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
59.8
0.29
2
75.32
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018039
Chromosome:
PEDO01013820.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020018
3710 - 7954
4245