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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013820.1_6042_6594_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6042 - 6594
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTGC
5'SS Class:
weak_major
3'SS Sequence:
CCAATCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
ATCTCCCCAATC
Flanking Amino Acid:
VNLVNDLFGAGFESVTNSLS
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
65.8
41.1
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
60.3
0.23
1
50.7
38
Minor 5ss
57.7
0.26
2
70.7
39.7
Minor BPS
52.4
0.05
1.9
65.88
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018039
Chromosome:
PEDO01013820.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020018
3710 - 7954
4245