Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013842.1_1660_2093_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1660 - 2093

Intron Length:

434

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTCCC

5'SS Class:

major

3'SS Sequence:

CCCCCCGCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAC

U12 Branch Point Sequence:

GGGAGCTGACGG

Flanking Amino Acid:

SPRHERLHVQPDVQPLLPAH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

65.8

40.2

Major BPS

57.5

0.19

1.1

48.8

38.1

Major PPT

0.41

0.9

60.6

29.4

Minor 5ss

28.6

-2.4

35.8

Minor BPS

33.5

-1.3

30.23

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023131

Chromosome:

PEDO01013842.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017482

657 - 2393

1737