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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013858.1_250_1856_R

Intron Information:

Intron Rank:
151502
Intron Class:
major
Intron Phase:
Intron Coordinates:
250 - 1856
Intron Length:
1607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGGTT
5'SS Class:
major
3'SS Sequence:
GTTTCATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTGTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
71.9
37.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.7
0.76
0.8
77.6
35.6
Minor 5ss
40.6
-1.1
3.8
63.6
48.1
Minor BPS
57.4
0.31
2.2
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029069
Chromosome:
PEDO01013858.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027870
48 - 2718
2671