Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013870.1_3318_3406_R

Intron Information:

Intron Rank:

153494

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3318 - 3406

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGATT

5'SS Class:

strong_major

3'SS Sequence:

CCCCAAAATACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCATTAA

U12 Branch Point Sequence:

TGTTCCCAAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.7

1.03

0.8

91.6

26.4

Major BPS

0.32

1.1

54.3

41.1

Major PPT

0.2

50.5

35.8

Minor 5ss

38.2

-1.3

3.4

56.9

47.4

Minor BPS

52.2

-0

2.1

64.84

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030059

Chromosome:

PEDO01013870.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023925

2254 - 6698

4445