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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013902.1_1551_2404_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1551 - 2404
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGACCAT
U12 Branch Point Sequence:
CCCCCCGTGACC
Flanking Amino Acid:
CADYMASTIGFYSASGMPTK
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
50.4
0.01
1.4
60.8
45.4
Major PPT
69.6
0.44
0.9
65.5
36.1
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
47.3
-0.2
2.1
54.63
44.1

Associated Gene:

Gene:
RNF121
Ensembl Gene ID:
ENSAPLG00000013169
Chromosome:
PEDO01013902.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013729
21 - 6522
6502