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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013902.1_2526_3231_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2526 - 3231
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCGAT
U12 Branch Point Sequence:
GTCGCTGGGACT
Flanking Amino Acid:
FTLFGLNLLFRIKPEDAMDF
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
61.2
0.28
1.4
60.4
45.8
Major PPT
81.1
0.7
0.8
75.7
32.7
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
42.6
-0.5
2.2
59.81
44.1

Associated Gene:

Gene:
RNF121
Ensembl Gene ID:
ENSAPLG00000013169
Chromosome:
PEDO01013902.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013729
21 - 6522
6502