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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013902.1_392_569_R

Intron Information:

Intron Rank:
7
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
392 - 569
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CCGTTCCACGCAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
GGCTCTTTAACT
Flanking Amino Acid:
KVDLKRMFSNPWERPHVMYG
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48
-0.1
1.4
53.6
45.9
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
67.4
0.39
0.9
61.8
33.8
Minor 5ss
96.3
1.56
0.7
94.6
16.8
Minor BPS
76
0.9
1.2
81.37
40.2

Associated Gene:

Gene:
RNF121
Ensembl Gene ID:
ENSAPLG00000013169
Chromosome:
PEDO01013902.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013729
21 - 6522
6502