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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013902.1_3980_4727_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3980 - 4727
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
TCTGCTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAC
U12 Branch Point Sequence:
GCCAGCGTAACA
Flanking Amino Acid:
WKQRHPRSYNMVTLFQMWVV
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
75.7
34.4
Major BPS
51.2
0.03
0.9
58.7
27.5
Major PPT
75.2
0.57
0.8
68.7
31.8
Minor 5ss
33.2
-1.9
3.3
42.7
38
Minor BPS
43.4
-0.5
2.3
52.16
45.7

Associated Gene:

Gene:
RNF121
Ensembl Gene ID:
ENSAPLG00000013169
Chromosome:
PEDO01013902.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013729
21 - 6522
6502