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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013957.1_959_1071_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
959 - 1071
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCGGGG
5'SS Class:
weak_major
3'SS Sequence:
TTGCCCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGGAC
U12 Branch Point Sequence:
TTGCCCTCCACA
Flanking Amino Acid:
MRKLMKRVNDECP
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.2
45.9
44.2
Major BPS
42.6
-0.4
1.4
36.7
42.3
Major PPT
74.8
0.56
0.8
68.8
31.7
Minor 5ss
27.6
-2.6
3.6
37.8
47
Minor BPS
53
0.09
2
69.22
42.9

Associated Gene:

Gene:
CPXM1
Ensembl Gene ID:
ENSAPLG00000024861
Chromosome:
PEDO01013957.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036101
21 - 2845
2825