Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013961.1_3692_4265_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3692 - 4265

Intron Length:

574

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCATC

5'SS Class:

strong_major

3'SS Sequence:

CCCTGTCCTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGGCAT

U12 Branch Point Sequence:

CATGCAAGGAGT

Flanking Amino Acid:

IYEPLSNSMEMSYYGEISIG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.8

81.3

32.8

Major BPS

51.1

0.03

1.5

63.1

44.4

Major PPT

74.6

0.55

0.8

64.9

36.4

Minor 5ss

38.5

-1.3

51.2

45.7

Minor BPS

36.2

-1

2.1

50.78

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009435

Chromosome:

PEDO01013961.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038009

1535 - 4508

2974

ENSAPLT00000009882

1535 - 4965

3431