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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013991.1_2027_2546_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2027 - 2546
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATTATATTCACT
Flanking Amino Acid:
RKQVARIRELEKKAAELAWR
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.4
40.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
31
-2.2
2.9
34.5
41
Minor BPS
50.5
0.09
2
76.04
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018760
Chromosome:
PEDO01013991.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047038
1749 - 5293
3545