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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013991.1_2027_2770_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2027 - 2770
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATTATATTCACT
Flanking Amino Acid:
GLGVYLFRKQEKKAAELAWR
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
50.5
0.09
2
76.04
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018760
Chromosome:
PEDO01013991.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025658
1749 - 5293
3545