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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013992.1_7490_11822_F

Intron Information:

Intron Rank:
129086
Intron Class:
major
Intron Phase:
Intron Coordinates:
7490 - 11822
Intron Length:
4333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAGG
5'SS Class:
strong_major
3'SS Sequence:
ACTCTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
AGATTCTCACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
68.1
42.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76
0.59
0.9
73.3
36.5
Minor 5ss
39
-1.2
2.8
49
46.8
Minor BPS
43.2
-0.6
1.8
44.88
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019437
Chromosome:
PEDO01013992.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041115
7121 - 18086
10966