Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013995.1_1326_1530_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1326 - 1530

Intron Length:

205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTGAGTTGC

5'SS Class:

major

3'SS Sequence:

TGCGCAGAGCAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CACCAAT

U12 Branch Point Sequence:

CGTCCACCAATG

Flanking Amino Acid:

NGIICDLIENCGILAMLDEE

Intron Amino Acid Position:

193

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

1.3

69.2

38.5

Major BPS

51.7

0.04

1.2

60.3

34.2

Major PPT

44.8

-0.3

1.2

34.2

39.5

Minor 5ss

36.5

-1.5

2.8

42.8

37.9

Minor BPS

40.2

-0.8

44.24

41.2

Associated Gene:

Gene:

MYO1A

Ensembl Gene ID:

ENSAPLG00000026849

Chromosome:

PEDO01013995.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032136

72 - 3603

3532