Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014011.1_1569_1697_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1569 - 1697

Intron Length:

129

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGT|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

ATCTGCCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCACAT

U12 Branch Point Sequence:

CCCCCCACATCT

Flanking Amino Acid:

VRNENQTALHVCGGPGHAAV

Intron Amino Acid Position:

217

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

1.1

56.1

43.1

Major BPS

52.8

0.07

1.1

60.5

36.2

Major PPT

68.8

0.42

0.9

58.8

37.7

Minor 5ss

28.6

-2.5

3.1

31.9

42.5

Minor BPS

41.6

-0.5

54.34

46.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029757

Chromosome:

PEDO01014011.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042636

21 - 2217

2197