About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014011.1_873_967_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
873 - 967
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGGGAC
U12 Branch Point Sequence:
GCCGTGGGGACA
Flanking Amino Acid:
RKVQLTCGLAGVTALGWATS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
78.6
37.3
Major BPS
42.6
-0.4
1.5
34.5
43.7
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
30.4
-2.2
3.2
38.7
46.6
Minor BPS
30.9
-1.5
2.3
34.05
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029757
Chromosome:
PEDO01014011.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042636
21 - 2217
2197